Causal Inference for Precision Medicine in Medtech R&D and Clinical Studies

Precision medicine is reshaping the landscape of medtech by tailoring treatments and diagnostics to each patient’s unique genetic, molecular, and clinical profile. As innovative devices and diagnostics enter the market, it becomes critical to understand not only whether they work, but why they work. Causal inference offers a robust statistical framework for distinguishing true treatment effects from mere associations, a challenge that is particularly pronounced in observational studies and real-world data settings. In this blog post, we explore how causal inference methods can be applied in the medtech context to enhance precision medicine.

Establishing Causality in Medtech Research

Randomised controlled trials (RCTs) have long been considered the gold standard for determining causality in terms of treatment efficacy. However, RCTs are not always feasible or ethical—especially in a context where apps or devices may be iteratively improved or used in real-world settings. Instead, observational data, such as from electronic health records, wearable sensors, and remote monitoring systems, is the core data source. In such settings, confounding variables can obscure the true effect of an intervention.

Causal inference methods, such as propensity score matching (PSM), have been widely adopted to address these challenges. For instance, Austin [1] provides an extensive review of propensity score methods that demonstrate how matching patients on observed covariates can simulate the conditions of a randomised trial. This approach has been used to evaluate the impact of continuous glucose monitoring systems in diabetic patients, helping to isolate the device’s effect on glycaemic control from patient-specific factors.

Another technique of causal inference is instrumental variable (IV) analysis, which is especially useful when unobserved confounders may bias results. In medtech, natural experiments—such as variations in the adoption rates of a new diagnostic tool across different hospitals—can serve as instruments. Angrist and Pischke [2] discuss how IV methods have been applied in health economics to infer causality, and similar approaches are now being employed in medtech studies to assess the true impact of innovations on patient outcomes.

Integrating Causal Inference with Machine Learning

Machine learning (ML) has further enriched the causal inference toolkit. Traditional statistical models can be combined with ML techniques to handle high-dimensional data for evaluating heterogeneous treatment effects across different patient subgroups. Causal forests, an extension of random forests, have gained attention for their ability to estimate individual treatment effects. A study by Athey and Imbens [3] demonstrated how causal forests can uncover complex interactions between patient characteristics and treatment responses in cardiovascular interventions. This highlights the potential of these methods to personalise treatment strategies further.

Structural equation modelling (SEM) is increasingly used to map out the causal pathways between device interventions and clinical outcomes. By delineating both direct and indirect effects, SEM provides a comprehensive view of how innovations in medtech influence patient care. For example, SEM has been utilised to study the cascade of effects following the introduction of wearable cardiac monitors, elucidating the pathways from data capture to clinical decision-making and ultimately improved patient survival rates.

Enhancing Post-Market Surveillance

Causal inference is not limited to the R&D phase; it plays a crucial role in post-market surveillance as well. Once a device is launched, continuous monitoring is essential to ensure its safety and effectiveness over time. Observational studies conducted in post-market settings can suffer from biases that obscure the device’s true performance. Techniques such as difference-in-differences (DiD) analysis and targeted maximum likelihood estimation (TMLE) are employed to control for these confounders and assess the ongoing impact of the technology.

For example, a recent observational study evaluating a new wearable cardiac monitor employed DiD analysis to compare readmission rates before and after device implementation across different hospitals [4]. This approach helped to attribute observed improvements in patient outcomes specifically to the device, after adjusting for broader trends in healthcare delivery. Such analyses are crucial for iterative improvements and for ensuring that any emerging risks are identified and mitigated promptly.

Informing Personalised Treatment Strategies

One of the most compelling applications of causal inference in precision medicine is its ability to inform personalised treatment strategies. By understanding which aspects of a medtech intervention drive beneficial outcomes, clinicians can tailor therapies to individual patients. Heterogeneous treatment effect (HTE) analysis, for instance, quantifies differences in response across patient subgroups, ensuring that treatments are optimally matched to those most likely to benefit.

A practical example can be found in studies evaluating AI-driven diagnostic tools. In a multi-centre study, researchers used causal inference techniques to determine that the tool’s accuracy varied significantly with patient demographics and comorbidities [5]. By identifying these variations, the study provided actionable insights that led to the refinement of the diagnostic algorithm, ensuring more consistent performance across diverse populations. This kind of evidence is critical in moving from one-size-fits-all approaches to truly personalised healthcare solutions.

Challenges and Future Directions

While the promise of causal inference in precision medicine is immense, challenges remain. One major hurdle is the need for comprehensive data collection. High-quality, routinely collected omics data is essential for these methods to reach their full potential, yet such data can be difficult to obtain consistently in clinical settings. Advances in data collection technologies, however, are making it easier to gather multi-omics and real-world data, which in turn will enhance the reliability of causal analyses.

As computational power and statistical methodologies continue to evolve, we expect that the integration of causal inference with other advanced analytics will become more seamless. Future research is likely to focus on developing hybrid models that combine causal inference, machine learning, and even deep learning techniques to further improve the precision and personalisation of medtech interventions.

Causal inference stands as a critical pillar in the quest to advance precision medicine in the medtech arena. By enabling researchers to untangle complex causal relationships from observational data, these methods ensure that the benefits of innovative devices and diagnostics can be accurately quantified and attributed. From enhancing RCT-like conditions with propensity score matching and instrumental variable analysis, to integrating machine learning techniques like causal forests, and supporting post-market surveillance through methods like DiD analysis, causal inference provides a robust framework for personalised healthcare.

As the field continues to mature, the routine collection of high-quality omics data and real-world evidence will be key to unlocking the full potential of these methods. By embracing causal inference alongside other advanced analytics techniques, medtech companies can accelerate the development of truly personalised solutions that not only improve clinical outcomes but also redefine patient care. In this rapidly evolving landscape, a comprehensive data-driven approach is becoming an operational necessity and a strategic imperative.

References
[1] Austin, P.C. (2011). An Introduction to Propensity Score Methods for Reducing the Effects of Confounding in Observational Studies. Multivariate Behavioral Research, 46(3), 399–424.

[2] Angrist, J.D., & Pischke, J.S. (2009). Mostly Harmless Econometrics: An Empiricist’s Companion. Princeton University Press.

[3] Athey, S., & Imbens, G. (2016). Recursive Partitioning for Heterogeneous Causal Effects. Proceedings of the National Academy of Sciences, 113(27), 7353–7360.

[4] Dimick, J.B., & Ryan, A.M. (2014). Methods for Evaluating Changes in Health Care Policy: The Difference-in-Differences Approach. JAMA, 312(22), 2401–2402.

[5] Rajpurkar, P., Irvin, J., Zhu, K., Yang, B., Mehta, H., Duan, T., … Lungren, M.P. (2018). Deep Learning for Chest Radiograph Diagnosis: A Retrospective Comparison of the CheXNeXt Algorithm to Practicing Radiologists. PLoS Medicine, 15(11), e1002686.

Analytics for Precision Medicine in Medtech R&D and Clinical Trials

Precision medicine is transforming healthcare by allowing treatments and diagnostics to be tailored to the unique genetic, molecular, and clinical profiles of individual patients. As research and clinical evaluation evolves, sophisticated analytics have become essential for integrating complex datasets, optimising study designs, and supporting informed decision-making. This article will explore 3 core quantitative approaches core to supporting the development of precision treatment solutions in Medtech.

1. Bayesian Adaptive Designs and Master Protocols

Traditional study designs often fall short of accommodating emerging data and shifting patient profiles. Bayesian adaptive designs offer a solution by enabling the regular updating of initial assumptions as data accumulates. By expressing early hypotheses as prior distributions and then refining them into posterior distributions with incoming trial data, a dynamic assessment of treatment or device performance can be achieved. This real-time updating can enhance the precision of efficacy and safety estimates and supports timely decisions regarding the continuation, modification, or termination of a study. When combined with master protocols—which enable the simultaneous evaluation of multiple interventions through shared control groups and adaptive randomisation—this approach optimises resource use and reduces sample sizes. These methodologies have been well established in pharmaceutical trials, particularly in oncology. Their adaptation to medtech is proving increasingly valuable as the field confronts challenges such as device iteration real-time data collection, and varied endpoint definitions. While the regulatory framework and trial designs for devices often differ from those in pharma, there is increasing interest in applying these flexible, data-driven approaches.

Key elements of Bayesian Adaptive designs include:

Prior Distributions and Posterior Updating
Initial beliefs about treatment or device performance are expressed as prior distributions. As the trial progresses, incoming data are used to update these priors into posterior distributions, providing a dynamic reflection of effectiveness.

Predictive Probabilities and Decision Rules
By calculating the likelihood of future outcomes, predictive probabilities inform whether to continue, modify, or halt a trial. This is particularly useful in managing heterogeneous patient populations typical of precision medicine contexts.

Decision-Theoretic Approaches
Incorporating loss functions and cost–benefit analyses allows for ethically and economically optimised trial adaptations, ensuring patient safety while maximising resource efficiency.

Master Protocols for Efficient Resource Use

Master protocols offer a unified framework for evaluating multiple interventions or device settings concurrently. Their benefits include:

Shared Control Groups
Utilising a common control arm across study arms reduces overall sample sizes while maintaining statistical power—an advantage when patient recruitment is challenging.

Adaptive Randomisation
Algorithms adjust randomisation ratios in favour of treatments or device settings showing early promise. This increases the ethical profile of a trial by reducing exposure to less effective options and accelerates the evaluation process.

Integrated Platform Trials
These protocols enable the simultaneous assessment of multiple hypotheses or functionalities, streamlining regulatory submissions and expediting market launch.

2. Multi‐Omics Insights Through Bioinformatics

The true potential of precision medicine lies in its ability to harness diverse biological data to form a complete picture of patient health. Integrating data from genomics, proteomics, metabolomics, and transcriptomics, for example, enables biomarker discovery, leading to detailed patient profiles that inform targeted interventions. Advanced statistical techniques, such as multivariate and clustering analyses, help process these complex datasets—identifying patterns and segmenting patient populations into meaningful subgroups. When combined with traditional clinical endpoints using survival models like Cox proportional hazards and Kaplan–Meier estimates, multi‐omics insights significantly enhance the precision of outcome predictions.

Key Advantages of Multi‐Omics Integration

Holistic Patient Profiling
By merging data from multiple biological sources, organisations can uncover novel biomarkers and generate comprehensive patient profiles, contributing to the development of more targeted and effective diagnostic tools and therapies.

Improved Patient Stratification
Dimensionality reduction techniques such as principal component analysis (PCA) and canonical correlation analysis (CCA) simplify high-dimensional omics data, while clustering methods like hierarchical clustering and Gaussian mixture models categorise patients into distinct subgroups. This stratification enables precision in selecting the most suitable interventions for different patient groups.

Enhanced Predictive Power
Multi‐omics integration, when combined with clinical endpoints, can improve long-term outcome predictions. Using models like Cox proportional hazards and Kaplan–Meier estimates, survival probabilities and disease progression can be assessed to improve the reliability of clinical decision-making.

Comprehensive Data Integration for Personalised Insights

Precision medicine often relies on the integration of multi‐omics data with traditional clinical measures to refine patient stratification and improve diagnostic accuracy. Medtech devices can be calibrated to detect clinically significant biomarker variations, enhancing both sensitivity and specificity of measurements. By leveraging bioinformatics-driven statistical methods, these insights become actionable and support the development of highly personalised therapeutic and diagnostic solutions.

3. Machine Learning for Targeted Insights

Machine learning has emerged as a transformative tool capable of deciphering complex, high-dimensional data with remarkable precision. Techniques such as LASSO regression, random forests, and support vector machines enable the isolation of the most predictive variables from vast datasets, reducing noise and minimising overfitting. Validation methods, including k-fold cross-validation and bootstrapping, evaluate the degree to which models are both accurate and generalisable, which is critical when clinical decisions depend on their outputs. Interpretability tools like SHAP values help stakeholders understand the factors driving model predictions, while continuous learning frameworks allow models to evolve as new data emerges. This adaptability is exemplified in practical applications. For medtech companies, machine learning bridges the gap between raw data and actionable insights. Consider a wearable diagnostic device: ML algorithms can continuously analyse sensor data to detect critical physiological patterns, adapting in real time to deliver personalised feedback and enhance device performance.

Machine learning (ML) complements traditional statistical methods by managing large, complex datasets and uncovering non‐linear relationships that might otherwise remain hidden. In precision medicine, ML applications include:

Feature Selection and Dimensionality Reduction
Algorithms such as LASSO regression, random forests, and support vector machines (SVM) identify the most predictive features from vast datasets. This process minimises overfitting and enhances model interpretability—critical when tailoring interventions or device functions.

Robust Model Validation
Techniques like k‐fold cross‐validation and bootstrapping ensure that ML models are robust and generalisable. Such rigour is essential for clinical applications where predictive accuracy translates directly into patient outcomes.

Model Interpretability and Continuous Learning
Tools like SHAP (SHapley Additive exPlanations) values help stakeholders understand model decisions, while continuous learning frameworks enable models to evolve as new patient data become available—ensuring that devices and treatments remain optimised over time.

A Practical Example

Consider a wearable cardiovascular diagnostic device undergoing clinical evaluation. Adaptive statistical models continuously update trial parameters based on real-time data so that decision-making is both responsive and informed. Multi-omics analyses stratify patients by genetic markers associated with cardiovascular risk to refine patient selection and enhancing the precision of outcome predictions. Meanwhile, machine learning algorithms process sensor data in real time to detect critical patterns, enabling the device to adapt its performance to the unique physiological profiles of its users.

The trial employs:

  • Bayesian adaptive designs to update trial parameters based on real-time data, enhancing decision-making.
  • Multi‐omics analysis to stratify patients by genetic markers linked to cardiovascular risk, refining patient selection.
  • Machine learning algorithms that identify key predictive features from sensor data, continuously adapting device performance.

This holistic strategy improves the precision of the trial and optimises the final product to meet specific patient needs.

4. Bonus Method: Causal Inference

While correlations in data provide valuable insights, understanding causation is key to effective precision medicine. Causal inference methods help differentiate true treatment effects from spurious associations by adjusting for confounding factors—a critical step when working with observational data or real-world evidence. Techniques such as propensity score matching, instrumental variable analysis, and causal forests enable researchers to isolate the impact of specific interventions on patient outcomes. Integrating causal inference into the analytics workflow reinforces the validity of conventional statistical methods and machine learning predictions. It also supports more reliable patient stratification and treatment optimisation. This approach increase the probability that the decisions made during R&D and clinical trials are grounded in true cause-and-effect relationships.

To read our full blogpost on the applications of causal inference in precision medicine R&D, see here.

Advanced statistics and bioinformatics is transforming the landscape of precision medicine by empowering organisations to make faster, more informed decisions throughout the R&D and clinical trials process. Adaptive clinical study design for real-time adjustments in study parameters improves the chances that a study remains responsive and efficient in assessing clinical endpoints. Multi-omics integration provides insights into patient biology and allows for precise stratification and targeted intervention. Complementing these approaches, advanced machine learning can be used to uncover hidden patterns in complex datasets, further enhancing predictive accuracy and operational efficiency. Although each method operates independently, together they represent a powerful toolkit for accelerating innovation and delivering patient-centred healthcare solutions with greater precision.

If you’d like to have an in-depth discussion about how our advanced analytics methods could play a valuable role in your device, app or diagnostic development, do get in touch. We would be more than happy to assess your project and answer any questions.

CRF Design for Clinical Studies: The Distinct Roles of Data Managers vs Biostatisticians

In medtech clinical trials, the Case Report Form (CRF) is more than a tool for collecting data—it’s the backbone of the study. From capturing critical safety outcomes to evaluating device performance, a well-designed CRF ensures that the study’s goals are met efficiently and reliably.

Achieving this balance requires input from two key roles: the data manager and the biostatistician. While their contributions may overlap in some areas, these roles serve distinct and complementary purposes. Understanding how these professionals work together can help medtech sponsors avoid common pitfalls in CRF design and maximise the success of their trials.

The Data Manager’s Role in CRF Design

Data managers are experts in the operational and technical aspects of CRF design. Their role is to ensure that data collection is standardised, consistent, and compliant with relevant guidelines.

Key responsibilities of a data manager include:

  • Formatting CRFs: Ensuring fields are user-friendly and compatible with electronic data capture (EDC) systems.
  • Regulatory Compliance: Aligning CRFs with industry standards such as CDASH (Clinical Data Acquisition Standards Harmonization).
  • Site Usability: Designing forms that facilitate accurate and consistent data entry across multiple trial sites.

For instance, a data manager might ensure that dropdown menus in the CRF prevent free-text responses, reducing the risk of inconsistencies. Their focus is on the practical and technical aspects of data collection.

The Biostatistician’s Role in CRF Design

Biostatisticians, on the other hand, approach CRF design from an analytical perspective. Their focus is on ensuring that the data collected aligns with the study’s endpoints and supports meaningful statistical analysis.

Key responsibilities of a biostatistician include:

  • Aligning Data with Study Objectives: Defining the variables that need to be captured to evaluate the endpoints outlined in the Statistical Analysis Plan (SAP).
  • Variable Definition: Ensuring that collected data supports statistical methods, such as properly coding categorical variables (e.g., mild/moderate/severe).
  • Derived Metrics: Identifying composite or derived variables that must be pre-defined in the CRF to support downstream analysis.

For example, in a post-market study evaluating a vascular device, the biostatistician would ensure that the CRF captures restenosis rates in a format that allows calculation of primary patency—a key endpoint. Their input ensures that no critical data points are overlooked.

Why Both Roles Are Essential to MedTech Trials

Although data managers and biostatisticians work towards the same goal—collecting high-quality data—their approaches and expertise are fundamentally different. Collaboration between these roles is essential for creating CRFs that are both operationally feasible and analytically robust.

1. Preventing Data Gaps

Without biostatistician oversight, CRFs may fail to capture key variables required for endpoint evaluation. For example:

  • In a stent study, a missing field for recording restenosis or target vessel occlusion could render the primary endpoint unanalysable.
  • Failure to specify timepoints for data collection (e.g., 12-month vs. 60-month follow-up) may result in incomplete datasets for secondary analyses.

2. Ensuring Data Compatibility

While data managers ensure that CRFs meet technical and regulatory standards, biostatisticians ensure the data is analyzable. Misalignment in variable formats can lead to delays or errors during analysis. For instance:

  • Categorical variables (e.g., adverse event severity) coded as free text at some sites and numeric values at others can complicate statistical programming.

3. Regulatory-Ready Analysis

In medtech trials, regulatory submissions rely heavily on robust statistical reporting. Biostatisticians ensure that CRFs are designed to collect all data necessary for generating high-quality, compliant analyses. For example:

  • Derived metrics like cumulative incidence rates must be pre-defined in the CRF to avoid regulatory scrutiny over post-hoc adjustments.

Misconceptions About CRF Design in MedTech

A common misconception in medtech trials is that data managers can fully handle CRF design. While data managers are essential for operationalising CRFs, their expertise does not extend to defining the analytical framework needed to support endpoints and hypotheses.

The Risks of Excluding Biostatistician Input

When biostatisticians are excluded from CRF design:

  • Key Variables May Be Missing: Critical fields for evaluating endpoints may be omitted.
  • Data May Be Misaligned: Improperly coded variables can lead to delays during analysis or errors in reporting.
  • Regulatory Challenges May Arise: Incomplete or improperly formatted data can result in regulatory delays or rejection.

By including biostatisticians early in the CRF design process, sponsors can avoid these risks and ensure their study remains on track.

Real-World Example: The Power of Collaboration

Consider a post-market surveillance study for a diagnostic device. The sponsor relies on CRFs to collect data on device performance across real-world clinical settings. Initially, the data manager designed the CRFs to focus on ease of use at the sites. However, the biostatistician identified a critical oversight: the CRFs did not include fields to track device calibration data, a key variable for assessing long-term performance trends. By collaborating, the data manager and biostatistician ensured the CRFs met both operational and analytical requirements, setting the stage for a successful regulatory submission.

Practical Steps for MedTech Sponsors

To ensure robust CRF design in your medtech trial, consider these steps:

  1. Involve Biostatisticians Early: Engage your biostatistician during the CRF design phase to define variables and ensure alignment with study endpoints.
  2. Foster Collaboration: Encourage close communication between data managers and biostatisticians to balance operational efficiency with analytical rigor.
  3. Prioritise Regulatory Readiness: Design CRFs with regulatory requirements in mind to avoid costly delays during submission.

Final Thoughts

In medtech clinical trials, the success of your study depends on more than just collecting data—it depends on collecting the right data in the right way. Data managers and biostatisticians each bring unique expertise to CRF design, and their collaboration ensures that your trial is set up for operational efficiency, analytical validity, and regulatory success.

By recognising the complementary roles of these professionals, medtech sponsors can avoid common pitfalls and ensure their studies deliver meaningful, actionable results. If you’re planning a clinical trial and want to learn more about how to optimise CRF design, our team at Anatomise Biostats is here to help.

Expert Opinion: Why Biostatistics Qualifications Matter in Med-Tech Industry Clinical Trials.

Consider the consequences if a medical doctor, without a formal medical education or licensing, were to diagnose and treat patients. Such a doctor might misunderstand symptoms, choose the wrong treatments, or even harm patients due to lack of understanding and experience. Similarly, an unqualified biostatistician might incorrectly analyse data, misinterpret statistical significance, or fail to recognise biases and patterns essential for accurate conclusions. These errors, when compounded across studies and publications, create a domino effect, misleading the medical community and affecting clinical guidelines that doctors worldwide follow.

When biostatistics work is flawed due to lack of proper training, the evidence that supports clinical decision-making is compromised. The gravity of these potential errors is amplified because biostatistics underpins clinical trial outcomes, which are often used to secure regulatory approval and define the standards for how to treat diseases. If flawed analysis leads to approving ineffective or harmful treatments, patients could suffer adverse effects from what they believe are safe therapies. In this sense, an unqualified biostatistician is even more dangerous than an unlicensed doctor, as their errors can influence the treatment decisions of countless doctors, each one putting their patients at risk based on incorrect or incomplete data.

Without proper qualifications, a biostatistician’s work can lead to harmful outcomes. This is because the analysis they perform underpins the scientific evidence that doctors rely on to make clinical decisions and guide patient care.


Why a Coursework Masters of Biostatistics an indispensable foundation

High-quality biostatistics programs offer advanced, in-depth training that goes far beyond basic statistical application. One of the core skills instilled is the ability to identify gaps in knowledge and continually adapt to the specific demands of each unique clinical trial. A competent biostatistician isn’t just someone who knows how to apply a set of methods; they are a problem-solver equipped to navigate complex, evolving situations, often needing to research, adapt, or even develop new techniques as each clinical context requires.

Unlike a research-based master’s thesis, which typically hones expertise in a narrow area, a coursework master’s in biostatistics emphasises a broad, structured understanding of the field, preparing individuals to apply statistical techniques accurately in a clinical context. Rigorous training in biostatistics is essential because the stakes are high, and the work of a biostatistician directly influences the treatment approaches trusted by healthcare providers around the world.

A hallmark of a quality biostatistics program is it’s focus on cultivating a mindset of critical evaluation and adaptability. Rather than simply learning a fixed set of methods, students are taught to understand the foundational principles of statistics and how to apply them thoughtfully across different clinical scenarios. This training includes learning how to question assumptions, test the validity of models, and assess the appropriateness of methods in light of each study’s design and data characteristics. It also involves learning how to identify situations where the standard, previously used methods may not suffice—an ability that can only come from a deep understanding of the mathematical principles underpinning statistical techniques.

The mathematical underpinnings of statistical tests can be subtle and intricate. Without specialised training, there’s a high risk that these mathematical nuances will be overlooked or mishandled. For example, failure to correctly adjust for confounding variables can make it appear as though a treatment effect exists when it doesn’t, leading to erroneous conclusions that could harm patients if implemented in clinical practice.

A well-prepared biostatistician is not only familiar with a wide range of statistical tools but also understands when each tool is appropriate, and more importantly, when it may be insufficient. Clinical trials often present unique challenges, such as complex interactions between variables, confounding factors, and datasets that may not conform neatly to traditional statistical models. In these cases, biostatisticians trained to think critically and independently can recognise that the standard approaches may fall short and are capable of researching novel methods, exploring the latest advancements, and adapting techniques to better fit the data at hand. This ability to assess, research, and innovate rather than rigidly apply textbook methods is what makes a biostatistician invaluable to clinical research.

Advanced biostatistics programs emphasise this flexibility, often incorporating coursework in emerging statistical methods, machine learning, and adaptive designs that are becoming increasingly relevant in modern clinical trials. These programs also provide hands-on training with real-world data, equipping students to handle the messy, imperfect datasets typical in clinical research. Graduates from rigorous programs gain the skills needed to work with a high degree of precision, recognising the limitations of each approach and adapting their methods to provide the most reliable analysis possible.

This commitment to continuous learning and adaptability is essential, particularly in a field as fast-evolving as clinical biostatistics. New statistical models, computational methods, and technologies are constantly emerging, offering powerful new ways to analyse data and uncover insights that would be missed with conventional methods. Biostatisticians trained to think critically and assess what they do not yet know are equipped to stay at the forefront of these advancements, ensuring that clinical trial data is analysed with the most effective and current techniques.

Individuals without this specialised training or with training from adjacent fields may lack this advanced skill set. While they may be familiar with statistical software and certain techniques, they often lack the deeper statistical grounding that allows them to identify gaps in their own knowledge, research novel techniques, and apply methods flexibly. They may rely more heavily on familiar, pre-existing methods, even when these approaches are suboptimal for the specific demands of a new clinical trial.

In clinical research, it’s critical to distinguish between fields that may seem related to biostatistics but lack the specialised training needed for rigorous clinical trial analysis. Adjacent disciplines such as biomedical engineering or bioinformatics, while valuable in their own right, do not provide the depth and specificity of statistical training required for high-stakes clinical biostatistics. Clinical trials demand a comprehensive understanding of advanced statistical methods, hypothesis testing, probability theory, and the practical challenges inherent in real-world clinical data. Without this foundation, there is a high risk that even a highly skilled professional in an adjacent field may misinterpret trial data or apply suboptimal models, potentially jeopardising trial results.

While adjacent fields like biomedical engineering and bioinformatics serve as valuable components to clinical research teams, they do not replace a biostatistician in terms of the depth of statistical expertise required to conduct clinical trials safely and effectively. Additionally, even within biostatistics itself, the rigour and quality of training can vary widely between institutions. A high-quality biostatistics qualification, grounded in coursework and practical experience, is essential to ensure that biostatisticians are fully prepared to meet the demands of clinical trial analysis, providing reliable evidence that healthcare providers can depend on to guide safe, effective patient care.


Core statistical concepts: Beyond Basic Stats


When we think about clinical trials, we often picture doctors, patients, and maybe lab scientists—but behind every trial is a biostatistician. They’re responsible for interpreting the data in a way that uncovers whether a treatment truly works, and just as importantly, whether it’s safe. On the surface, this might sound like standard statistics, but the reality is far more complex. Clinical trials involve intricate designs, variable data, and outcomes that hinge on precisely the right analytical approach. Here’s why a biostatistician needs a Master’s degree in biostatistics to navigate this terrain.


The Power Calculation: Not Just Plugging in Numbers

One of the most fundamental tasks in clinical trials is calculating statistical power—essentially, determining the sample size required to detect a treatment effect if it exists. While it might sound as simple as choosing a sample size, calculating power is actually a multi-layered process, filled with nuances that require advanced training.

A biostatistician needs to understand how effect size, variability, sample size, and study design all interact. For instance, they can’t simply use a pre-set formula; they must examine assumptions about the patient population, factor in dropout rates, and sometimes even simulate different scenarios to see how robust their sample size calculation is. If the sample size is too small, the study could miss a true treatment effect, leading to the incorrect conclusion that a treatment is ineffective. Too large, and it wastes resources and could expose patients to unnecessary risk.

An advanced biostatistics program should explore how to conduct sensitivity analyses, interpret simulation results, and understand the trade-offs in different power calculation approaches. These skills can be impractical to cultivate on the job without a solid foundation.


Hypothesis Testing: Far More Than Just a P-value

Hypothesis testing often gets reduced to p-values, but in clinical trials, p-values are just the tip of the iceberg. Deciding how to structure a hypothesis test is a skill that requires an in-depth understanding of the trial design, data type, and statistical limitations. P-values themselves are affected by factors like sample size and effect size, and they depend on correct assumptions about the data. If these assumptions are even slightly off, the results could be misleading. Additionally, a significant p value is not necessarily clinically meaningful – an effect size must be carefully considered.

Suppose a trial includes multiple subgroups, such as different age ranges, where treatment response might vary. A biostatistician needs to decide whether to test each group separately or combine them, taking into account the risk of inflating the false positive rate. They may have to employ adjustments like the Bonferroni correction or false discovery rate, each with its own implications for the results’ reliability. Knowing when and how to apply these adjustments requires expertise in statistical trade-offs—a skill set that goes beyond basic training.


Bayesian Modelling: The Complexity of Integrating Prior Information

In clinical trials, Bayesian modelling offers the flexibility to incorporate prior information, which can be crucial when there’s existing data on similar treatments. But building a Bayesian model is not as simple as adding a prior and letting the data “speak.” Bayesian analysis is an iterative, highly contextual process that involves understanding the nuances of prior selection, data updates, and model convergence.

For example, in a trial with limited data, the biostatistician might consider a prior based on past studies. But they need to ensure that the prior doesn’t overpower the current data, especially if the populations differ in meaningful ways. They’ll also have to assess how sensitive the model is to the chosen prior—small changes can have a large impact on the results. Once the model is built, they will test it with simulations, iteratively refine their approach, and apply computational techniques like Markov Chain Monte Carlo methods to ensure accurate estimates.

Core skills include how to choose and validate priors, handle computational challenges, and interpret Bayesian results in a way that is both statistically valid and clinically meaningful. Without this background, Bayesian methods could be misapplied, leading to conclusions that are overly dependent on prior data, potentially skewing the trial’s findings.


Handling Confounding Variables: Getting to the True Treatment Effect

Confounding variables are one of the most significant challenges in clinical trials. These are external factors that could influence both the treatment and the outcome, creating a false impression of effect. Managing confounding variables isn’t as simple as throwing all variables into a model. It involves selecting the right approach—whether that’s stratification, regression adjustment, or propensity score matching—to isolate the treatment’s actual impact.

Imagine a trial assessing the effect of a heart medication where younger patients tend to recover faster. If age isn’t properly accounted for, the results might suggest that the treatment is effective, simply because younger patients are overrepresented in the treatment group. Handling such confounding factors involves understanding the dependencies between variables, testing assumptions, and assessing the adequacy of different adjustment techniques.

Biostatistics programs address these complexities, teaching biostatisticians how to identify and handle confounders, use advanced models like inverse probability weighting, and validate their adjustments with sensitivity analyses. This is not something that can be mastered without a solid foundation in statistics and it’s application to medicine.

A practical example:


Consider a clinical trial evaluating an innovative cardiac monitoring device intended to reduce adverse cardiovascular events in a diverse patient population, with participants spanning a wide range of ages, co-morbidities, and cardiovascular risk profiles. The complexity of this study lies not only in the heterogeneity of the patient population but also in the need to accurately capture the device’s effectiveness over extended time periods and in varied real-world contexts. Here, standard statistical methods may fail to capture the full picture; without careful investigation and adaptation, these methods could miss critical variations in device effectiveness across different patient subgroups. Missteps in analysis could lead to misguided conclusions, resulting in the misapplication of the device or failure to recognise its specific benefits for certain populations.

An unqualified biostatistician, seeing only the broad structure of the trial, might select standard statistical approaches such as repeated measures analysis or proportional hazards models, assuming that the device’s impact can be summarised uniformly across patients and time. These methods, while effective in certain contexts, may oversimplify the true complexity of the data. For instance, these approaches may overlook significant patient-specific variations, assuming all patients respond similarly over time, and fail to address potential dependencies across repeated measurements. In doing so, they risk obscuring insights into how the device performs across age groups, co-morbidity profiles, or geographic regions.

A competent biostatistician, however, would recognise that such a complex, dynamic scenario demands a more tailored and investigative approach. They would start by reviewing trial specifics—population diversity, data structure, and endpoints—and identifying the particular challenges these present. This initial assessment might lead them to consider a range of advanced modelling techniques, from hierarchical models and frailty models to time-varying covariate models, evaluating each option to find the best fit for the study’s unique demands.

For instance, a hierarchical model could capture variability at multiple levels—such as individual patients, treatment centres, or geographic clusters—allowing the biostatistician to account for factors that might cluster within sites or subgroups. If, for example, patients from one geographic area tend to experience more adverse events, a hierarchical model would help isolate these effects, ensuring they don’t skew the treatment outcomes. A frailty model, on the other hand, might be more appropriate if there are unobserved variables influencing patient outcomes, such as genetic predispositions or lifestyle factors that impact how individuals respond to the device. Each model offers benefits but comes with specific assumptions and limitations, requiring the biostatistician to weigh these factors carefully.

The biostatistician would then move beyond selecting a method, entering a phase of critical evaluation and testing. They perform model diagnostics to check assumptions, such as independence and proportional hazards, assessing how well each model fits the trial data. If they find that patient characteristics change over time, influencing treatment response, they may pivot toward a time-varying covariate model. Such a model could capture how the effectiveness of the device changes with patient health fluctuations, an essential insight in trials where health status is dynamic. Rather than assuming proportional effects across time, this approach would allow the analysis to reflect real-world shifts in patient health and co-morbidity, enhancing the relevance of the results for long-term patient care.

In addition, the biostatistician may implement advanced stratification techniques or subgroup analyses, aiming to parse out the effects of specific co-morbidities like diabetes or chronic kidney disease. These approaches are not simply a matter of segmenting data; they require careful control of confounding variables and an understanding of how stratification affects power and interpretation. The biostatistician could explore techniques such as propensity score weighting or covariate balancing to create comparable subgroups, helping to isolate the device’s effect on each subgroup with minimal bias. This ensures that the treatment effect estimation is not conflated with unrelated patient characteristics, like age or pre-existing health conditions, which could distort the true efficacy of the device.

Because of the trial’s longitudinal design, the biostatistician would also need to research and carefully apply methods that accommodate time-dependent covariates. They might examine the appropriateness of flexible parametric survival models over the traditional Cox model, especially if patient health or response to treatment fluctuates significantly over time. By reviewing the latest literature and comparing models through simulation studies, the biostatistician can determine which methods best capture the time-varying nature of the data without introducing artefacts or biases. For instance, a flexible model might reveal periods during which the device is particularly effective, or it could show diminishing efficacy as patients’ health profiles evolve, offering critical insights into when and for whom the device provides the most benefit.

In this rigorous process, the biostatistician doesn’t simply apply methods—they conduct an iterative investigation, refining their approach with each step. Sensitivity analyses, for example, might be run to determine how robust findings are to different modelling choices or to evaluate the impact of unmeasured confounders. Through this iterative process, they test assumptions, explore the validity of each approach, and adjust techniques to ensure that their final analysis captures the device’s effectiveness in a nuanced, clinically relevant way. This stands in contrast to a one-size-fits-all analysis, where insights into key variations across patient subgroups may be lost.

Ultimately, the advanced approach adopted by a qualified biostatistician goes beyond statistical rigour—it provides a comprehensive, meaningful picture of the device’s real-world effectiveness. By thoroughly investigating and validating each method, the biostatistician ensures that their analysis accurately reflects how the device performs across diverse patient populations. This depth of analysis provides doctors with reliable, specific insights into which patients are most likely to benefit, supporting safer, more personalised treatment decisions in real-world clinical settings.

Biometrics & Clinical Trials Success:

Why Outsourcing a Biostatistics Team is Pivotal to the Success of your Clinical Trial

Clinical trials are among the most critical phases in bringing a medical device or pharmaceutical product to market, and ensuring the accuracy and integrity of the data generated is essential for success. While some companies may feel confident relying on their internal teams, especially if they have expertise in AI or data science, managing the full scope of biometrics in clinical trials often requires far more specialised skills. Building a dedicated in-house team may seem like a natural next step, but it can involve significant time, cost, and resource investment that can sometimes be underestimated.

Outsourcing biometrics services offers a streamlined, cost-effective alternative, providing access to a team of specialists in statistical programming, quality control, and regulatory compliance. Much like outsourcing marketing or legal services, entrusting biometrics to an external team allows businesses to focus on their core strengths while ensuring the highest standards of data accuracy and regulatory alignment. In this article, we explore why outsourcing biometrics is a smarter approach for clinical trials, offering the expertise, flexibility, and scalability needed to succeed.

1. Expertise Across Multiple Disciplines

Clinical trials require a blend of specialised skills, from statistical programming and data management to quality control and regulatory compliance. Managing these diverse requirements internally can stretch resources and may lead to oversights. When outsourcing to a biometrics team, companies can access a broad range of expertise across all these critical areas, ensuring that every aspect of the trial is handled by specialists in their respective fields.

Instead of spreading resources thin across a small internal team, outsourcing offers a more efficient approach where every key area is covered by experts, ultimately reducing the risk of errors and enhancing the quality of the trial data.


2. Avoid Bottlenecks and Delays

Managing the data needs of a clinical trial requires careful coordination, and internal teams can sometimes face bottlenecks due to workload or resource limitations. Unexpected delays, such as staff absences or project overload, can slow progress and increase the risk of missed deadlines.

Outsourcing provides built-in flexibility, where a larger, more experienced team can step in when needed, ensuring work continues without interruption. This kind of seamless handover keeps the trial on track and avoids the costly delays that might arise from trying to juggle too many responsibilities in-house.


3. Improved Data Quality Through Redundancy

One of the advantages of outsourcing biometrics is the added level of redundancy it offers. In-house teams, particularly small ones, may not have the capacity for thorough internal quality checks, potentially allowing errors to slip through.

Outsourced teams typically have multiple layers of review built into their processes. This ensures that data undergoes several levels of scrutiny, significantly reducing the risk of unnoticed mistakes and increasing the overall reliability of the analysis.


4. Flexibility and Scalability

The nature of clinical trials often shifts, with new sites, additional data points, or evolving regulatory requirements. This creates a demand for scalability in managing the trial’s data. Internal teams can struggle to keep up as the project grows, sometimes leading to bottlenecks or rushed work that compromises quality.

Outsourcing biometrics allows companies to adapt to the changing scope of a trial easily. A specialised team can quickly scale its operations to handle additional workload without compromising the timeline or quality of the analysis.


5. Ensuring Regulatory Compliance

Meeting regulatory requirements is a critical aspect of any clinical trial. From meticulous data documentation to adherence to best practices, there are stringent standards that must be followed to gain approval from bodies like the FDA or EMA.

Outsourcing to an experienced biometrics team ensures that these standards are met consistently. Having worked across multiple trials, outsourced teams are well-versed in the latest regulations and can ensure that all aspects of the trial meet the necessary compliance requirements. This reduces the risk of costly rejections or trial delays caused by non-compliance.


6. Enhanced Data Security and Infrastructure

Handling sensitive clinical trial data requires secure systems and advanced infrastructure, which can be costly for companies to manage internally. Maintaining this infrastructure, along with the necessary cybersecurity measures, can quickly escalate expenses, especially for smaller in-house teams.

By outsourcing biometrics, companies gain access to teams with pre-existing secure infrastructure designed specifically for clinical data. This not only reduces costs but also mitigates the risk of data breaches, ensuring compliance with privacy regulations like GDPR.


7. Hidden Challenges of Building an In-House Team

While building an in-house biometrics team might seem appealing, it comes with it’s hidden challenges and costs that are easily overlooked. Recruitment, training, administrative load and retention all contribute to a growing budget, along with HR costs and the ongoing need to invest in tools and advanced infrastructure to keep the team effective.

Outsourcing offers a clear financial benefit here. Companies can bypass many resource draining activities and gain immediate access to a team of experts, without having to worry about ongoing staff management or the investment in specialised tools.


8. Unbiased Expertise

Internal teams may face pressure to align with existing company practices or preferences, which can sometimes lead to biased decisions when it comes to methodology or quality control. Outsourced teams are entirely independent and focused solely on delivering objective, high-quality results. This ensures that the best statistical methods are applied, without the potential for internal pressures to sway critical decisions.


The Case for Outsourcing Biometrics

Clinical trials are complex and require a range of specialised skills to ensure their success. While building an in-house team might seem like an intuitive solution, it often introduces unnecessary risks, hidden costs, and logistical challenges. Outsourcing biometrics to a specialised team offers a streamlined, scalable solution that ensures trial data is handled with precision and integrity, while maintaining regulatory compliance.

By leveraging the expertise of an external biometrics team, companies can focus on their core strengths—whether it’s developing a breakthrough medical device or innovating in their field—while leaving the complexities of biometrics to the experts.


If you’re preparing for your next clinical trial and want to ensure
reliable, accurate, and compliant results, contact Anatomise Biostats
today. Our expert biometrics team is ready to support your project
and deliver the results you need to bring your medical device to
market with confidence.


Checklist for proactive regulatory compliance in medical device R&D projects

In today’s competitive and highly regulated medical device industry, ensuring regulatory compliance is not merely a legal obligation—it is fundamental to guaranteeing the safety, efficacy, and overall quality of your innovations. Whether you are developing a new device or conducting clinical trials, a proactive and integrated approach to compliance can help you navigate the complexities of the regulatory landscape. This guide provides a comprehensive overview of strategies for embedding regulatory considerations into every stage of medical device R&D and clinical trial biostatistics, offering practical insights to build trust with regulatory authorities, healthcare professionals, and patients alike.

Medical Device R&D Regulatory Compliance

1. Early Involvement of Regulatory Experts
Bringing regulatory experts on board at the very start of your project can save you time, resources, and potential headaches later. Think of them as navigators who help chart the safest course through the regulatory landscape. They can provide insights on the necessary documentation, best practices to follow, and how to avoid pitfalls that might not be apparent until later stages. Their early input ensures that your R&D process is built on a strong foundation of compliance.

2. Stay Updated with Regulations
Regulations in the medical device arena are not static—they evolve as new technologies emerge and safety standards improve. Much like keeping up with the latest software updates for your smartphone, you need to remain informed so your processes remain secure and efficient. Regularly check for updates from agencies such as the MHRA or the European Medicines Agency, and consider subscribing to industry newsletters or alerts. This proactive approach enables you to adjust your strategy in real time, ensuring your project always meets the current standards.

3. Build a Strong Regulatory Team
A dedicated regulatory team acts as the backbone of your project. By assembling a group of professionals with expertise in regulatory affairs, quality assurance, and compliance, you create a supportive network that works closely with R&D, manufacturing, and quality control teams. This integrated approach ensures that everyone speaks the same language of compliance and that decisions are made with a clear understanding of the regulatory implications.

4. Conduct Regulatory Gap Analysis
Think of a gap analysis as a health check-up for your processes. It involves a thorough review of your current practices against the regulatory requirements. This analysis helps you identify areas needing improvement before they escalate into major issues. By addressing these gaps early, you can avoid costly delays or the need for rework later in the development cycle.

5. Implement Quality Management Systems (QMS)
A robust QMS is essential for managing the complexities of medical device development. Standards such as ISO 13485 provide a structured framework to ensure quality at every stage—from initial design through to post-market surveillance. Implementing a QMS means setting up systems for comprehensive documentation, process control, and continuous improvement, which not only aids in compliance but also enhances overall product quality.

6. Adopt Design Controls
Design controls are the guardrails of your R&D process. They ensure that every design decision is thoroughly documented, justified, and subject to review. This involves keeping detailed records of design changes, test results, and risk assessments. Following guidelines such as those from the MHRA or FDA helps create a transparent process that is easier to audit and defend during regulatory reviews.

7. Risk Management
In medical device development, risk management is an ongoing process. It involves identifying potential hazards, evaluating associated risks, and implementing strategies to mitigate these risks. Think of it as creating a safety net for your project—by planning for what might go wrong, you can reduce the impact of unforeseen issues and ensure that patient safety remains a top priority.

8. Clinical Trials and Data Collection
If your device requires clinical testing, planning and executing trials with regulatory compliance in mind is critical. This means designing studies that are ethically sound, statistically robust, and meticulously documented. Every detail—from the clinical trial protocol to ethics committee approvals—must align with regulatory expectations, ensuring that the data you collect is both credible and acceptable for submission.

9. Preparation for Regulatory Submissions
Preparing for regulatory submissions is like assembling all the pieces of a complex puzzle. Begin early by gathering and organising every document you will need, from technical files to test results. Early preparation provides ample time to review your submission package, ensuring that everything is accurate, complete, and compliant with the latest guidelines.

10. Engage with Regulatory Authorities
Maintaining open lines of communication with regulatory bodies can make a significant difference. By engaging with them throughout the development process—whether through pre-submission meetings or regular updates—you can clarify any uncertainties, receive valuable feedback, and build a positive rapport that may ease any challenges during the review process.

11. Post-Market Surveillance
Regulatory compliance does not end once your device hits the market. Post-market surveillance is essential to continuously monitor the device’s performance and safety. By systematically collecting and analysing data after commercialisation, you can promptly address any adverse events, update safety information, and ensure ongoing compliance with post-market regulatory requirements.

12. Training and Education
Continuous learning is key to maintaining a culture of compliance. Regular training sessions for everyone involved—from the R&D team to quality control—ensure that all members remain up to date on regulatory standards, understand how to implement them effectively, and recognise their roles in maintaining compliance. This not only minimises errors but also empowers your team to contribute actively to the project’s success.

Biostatistics Checklist for Regulatory Compliance in Clinical Trials

1. Early Biostatistical Involvement
Inviting biostatisticians to join the project at the very beginning helps shape the study design, data collection methods, and analysis plans right from the outset. Their expertise ensures that the study is methodologically sound and that statistical considerations are fully integrated into every stage of the trial.

2. Compliance with Regulatory Guidelines
Keeping abreast of guidelines such as ICH E9 and the MHRA’s or FDA’s guidance documents is crucial to ensure that your statistical methods meet regulatory expectations. This means routinely checking for updates and incorporating these standards into your analysis protocols, thereby building a strong case for the credibility and reliability of your findings.

3. Sample Size Calculation
Accurate sample size calculation is more than just a numerical exercise—it ensures that your study has enough power to detect clinically meaningful effects. This careful planning step guarantees that the trial is neither underpowered (risking inconclusive results) nor over-resourced (leading to unnecessary expense and complexity), thereby underscoring the scientific integrity of your study.

4. Randomisation and Blinding
Randomisation and blinding are fundamental practices for reducing bias in clinical trials. Implementing robust randomisation methods ensures that study groups are comparable, while effective blinding safeguards the integrity of the data by preventing any inadvertent influence on the study outcomes. These practices are vital for earning the trust of regulatory bodies and the scientific community.

5. Data Quality Assurance
Establishing comprehensive data quality assurance processes involves rigorous data monitoring, validation, and resolution of any queries. This step ensures that every data point is accurate and reliable, which is critical for drawing sound conclusions and making confident regulatory submissions.

6. Handling Missing Data
Missing data can undermine the validity of your analysis if not handled correctly. Developing clear strategies—whether through statistical imputation methods or sensitivity analyses—ensures that your conclusions remain robust and your study maintains its scientific rigour.

7. Adherence to the Statistical Analysis Plan (SAP)
The SAP serves as a blueprint for how the data will be analysed once collected. Adhering strictly to this plan ensures transparency and consistency in your analyses, supporting the integrity of your findings and providing a clear audit trail for regulators reviewing your work.

8. Statistical Analysis and Interpretation
Rigorous statistical analysis involves not only processing the numbers but also interpreting what they signify in the context of your study objectives. By carefully analysing and accurately interpreting the data, you can draw conclusions that are scientifically robust and align with regulatory expectations.

9. Interim Analysis (if applicable)
For some trials, interim analysis is conducted to assess the study’s progress and to inform necessary adjustments. When carried out according to the predefined protocol in the SAP, interim analysis can help ensure that the study remains on track and offers early insights to inform future decision-making—all while preserving the study’s integrity.

10. Data Transparency and Traceability
Maintaining detailed records and clear documentation of all data-related activities is essential. This practice ensures that every step of your analysis is transparent and that all data are easily traceable, which can prove invaluable during regulatory reviews and audits.

11. Regulatory Submissions
When compiling your submission package, the statistical sections of your Clinical Study Reports (CSRs) or Integrated Summaries of Safety and Efficacy must be thorough and well-organised. Clear, comprehensive statistical documentation helps regulators understand and trust your analysis methods and conclusions.

12. Data Security and Privacy
Protecting patient data is not only a regulatory requirement but also an ethical imperative. Implementing robust data security measures and adhering to data protection regulations (such as GDPR) ensures that all collected data are safeguarded, fostering trust among study participants and regulators alike.

13. Post-Market Data Analysis
Even after the clinical trial phase, ongoing data analysis is critical to monitor the long-term safety and effectiveness of the medical product. By planning for post-market data collection and analysis, you create a feedback loop that can inform future improvements and ensure sustained compliance with regulatory standards.

Achieving regulatory compliance in medical device development and clinical research is a multifaceted endeavour that demands continuous learning, proactive planning, and cross-disciplinary collaboration. By engaging experts early, staying current with evolving regulations, and implementing robust quality management, risk management, and statistical practices, organisations can not only streamline the approval process but also foster a culture of excellence and innovation. This comprehensive framework serves as a blueprint for ensuring that every step—from design and testing to market entry and post-market surveillance—is aligned with the highest standards of safety and efficacy, ultimately paving the way for long-term success and credibility in the healthcare industry.

Take advantage of a free initial consultation with Anatomise Biostats and plan the biometrics side of your product development early.

The Call for Responsible Regulations in Medical Device Innovation

In the seemingly fast-paced world of medical technology, the quest for innovation is ever-present. However, it is crucial to recognise that the engineering of medical devices should not mirror the recklessness and hubris of exploratory engineering exemplified by the recent Ocean Gate tragedy where the stubborn blinkeredness of figures like Stockton Rush is not kept in check by sufficiently stringent regulations and safety standards. While it may seem in poor taste to criticise one who has lost their life under such tragic circumstances, the incident is absolutely emblematic of everything that can go wrong when the hubris of the innovator left relatively unbridled in the service of short-term commercial gains. More troubling in this case was that American safety standards were in place to protect human life, however the company was able to operate outside the United States jurisdiction in order to by-pass those standards. Fortunately, most medical device patients will not be receiving treatment over international waters. Despite this there exist loopholes to be filled.

The jurisdictional loophole of “export only” medical device approval

As of 2022 the United States pulls in 41.8% of global sales revenue from medical devices. 10% of Americans currently have a medical device implanted and 80,000 Americans have died as a result of medical devices over the past 10 years. Interestingly Americans have the 46th highest life expectancy in the world despite having dis-proportionally high access to the most advanced medical treatments, including medical devices. Perhaps more worryingly, thousands of medical devices manufactured in the United States are FDA approved for “Export Only” meaning they do not pass the muster for use by American citizens. This “Export Only” status is one factor that partially accounts for America’s disproportionate share of the global medical device market. Foreign recipients of such medical devices are just as often from developed countries with their own high regulatory standards such as Australia, United Kingdom and Europe, and have accepted the device based on its stamp of approval by the FDA. Patients in these countries are typically not made aware of the particular risks, have not been disclosed the reasons why it has not been approved for use in the United States, nor that it has failed to gain this approval in its country of origin.

Local regulators such as the TGA in Australia, the MDR in Europe, or the MHRA in the UK, all claim to have some of the most stringent regulatory standards in the world. Despite this, American devices designated “Export Only” by the FDA, there are roughly 4600 in total, get approved predominantly due to differential device classification between the FDA and the importing country. By assigning a less risky class in the importing country the device escapes the need for clinical trials and the high level of regulatory scrutiny it was subject to in the United States. While devices that include medicines, tissues or cells are designated high risk in Australia and require thorough clinical validation, implantable devices for example can require only a CE mark by the TGA. This means that an implantable device such as a titanium shoulder replacement that has failed clinical studies in the United States and received an “Export Only” designation by the FDA can be approved by the TGA with or MDR with very little burden of evidence.

Regulatory standards must begin to evolve at the pace of technology.

Of equal concern is the need for regulatory standards that dynamically keep up with the pace of innovation and the emergent complexity of the devices we are now on a trajectory to engineer.

It is no longer enough to simply prioritise safety, regulation, and stringent quality control standards, we now need to have regular re-assessments of the standards themselves to evaluate whether they in-fact remain adequate to assess the novel case at hand. In many cases, even with current devices under validation, the answer to this question could well be “no”. It is quite possible that methods that would have previously seemed beyond consideration in the context of medical device evaluation, such as causal inference and agent-based models, may now become integrated into many a study protocol. Bayesian methods are also becoming increasingly important as a way of calibrating to increasing device complexity.

When the stakes involve devices implanted in people’s bodies or software making life-altering decisions, the need for responsible innovation becomes paramount.

If an implantable device also has a software component, the need for caution increases and exponentially so if the software is to be driven by AI. As these and other hybrid devices become the norm there is a need to test and thoroughly validate the reliability of machine learning or AI algorithms used in the device, the failure rate of software, and how this rate changes over time, software security and susceptibility to hacking or unintended influence from external stimuli, as well as the many metrics of safety and efficacy of the physical device itself.

The Perils of Recklessness:

Known for his audacious approach to deep-sea exploration, Stockton Rush has become a symbol of recklessness and disregard for safety protocols. While such daring may be thrilling in certain fields, it has no place in the medical device industry. Creating devices that directly impact human lives demands meticulous attention to detail, adherence to rigorous safety standards, and a focus on patient welfare.

There have been several class action lawsuits in recent years related to medical device misadventure. Behemoth Johnson & Johnson has been subject to several class action law suits pertaining to its medical devices. A recent lawsuit brought against the company, along with five other vaginal mesh manufacturers, was able to establish that 4000 adverse events had been reported to the FDA which included serious and permanent injury leading to loss of quality of life. Another recent class-action lawsuit relates to Johnson & Johnson surgical tools which are said to have caused at least burn injuries to at least 63 adults and children. These incidents are likely the result of recklessness in pushing these products to market and would have been avoidable had the companies involved chosen to conduct proper and thorough testing in both animals and humans. Proper testing occurs as much on the data side as in the lab and entails maintaining data integrity and statistical accuracy at all times.

Apple has recently been subject to legal action due to the their racially-biased blood oxygen sensor which, as with similar devices by other manufacturers, is able to detect blood oxygen more accurately for lighter skinned people than dark. Dark skin absorbs more light and can therefore give falsely elevated blood oxygen readings. It is being argued that users believing their blood oxygen levels to be higher than actual levels has contributed to higher incidences of death in this demographic, particularly during the pandemic. This lawsuit could have likely been avoided If the company had conducted more stringent clinical trials which recruited a broad spectrum of participants and stratified subjects by skin tone to fairly evaluate any differences in performance. If differences were identified, they should also have been transparently reported on the product label, if not also discussed openly in sales material, so that consumers can make an informed decision as to whether the watch was a good choice for them based on their own skin tone.

Ensuring Regulatory Oversight:

To prevent the emergence of a medtech catastrophes of unimagined proportions, robust regulation and vigilant oversight are crucial as we move into a newer technological era. Not just to redress current inadequacies in patient safeguarding but to also to prepare for new ones. While innovation and novel ideas drive progress, they must be tempered with accountability. Regulatory bodies play a vital role in enforcing safety guidelines, conducting thorough evaluations, and certifying the efficacy of medical devices before they reach the market. Striking the right balance between promoting innovation and safeguarding patient well-being is essential for the industry’s long-term success.

Any device given “Export Only” status by the FDA, or indeed by any other regulatory authority,  should necessitate further regulatory testing in the jurisdictions in which it is intended to be sold and should by flagged by local regulatory agencies as insufficiently validated. Currently this seems to be taking place more in word than in deed under may jurisdictions.

Stringent Quality Control Standards:

The gravity of medical device development calls for stringent quality control standards. Every stage of the development process, from design and manufacturing to post-market surveillance, must prioritize safety, reliability, and effectiveness. Employing best practices, such as adherence to recognized international standards, robust testing protocols, and continuous monitoring, helps identify and address potential risks early on, ensuring patient safety remains paramount.

Putting Patients First:

Above all, the focus of medical device developers should always be on patients. These devices are designed to improve health outcomes, alleviate suffering, and save lives. A single flaw or an overlooked risk could have devastating consequences. Therefore, a culture that fosters a sense of responsibility towards patients is vital. Developers must empathize with the individuals who rely on these devices and remain dedicated to continuous improvement, addressing feedback, and learning from past mistakes.

Putting patient safety as the very top priority is the only way to avoid costly lawsuits and bad publicity stemming from a therapeutic device that was released onto the market too early in the pursuit of short-term financial gain. While product development and proper validation is an expensive and resource consuming process, cutting corners early on in the process will inevitably lead to ramifications at a later stage of the product life cycle.

Allowing overseas patients access to “export only” medical devices is attractive to their respective companies as it allows data to be collected from the international patients who use the device, which can later be used as further evidence of safety in subsequent applications to the FDA for full regulatory approval. This may not always be an acceptable risk profile for the patients who have the potential to be harmed. Another benefit of “Export Only” status to American device companies is that marketing the device overseas can bring in much needed revenue that enables further R&D tweaks and clinical evaluation that will eventually result in FDA approval domestically. Ultimately it is the responsibility of national regulatory agencies globally to maintain strict classification and clinical evidence standards lest their citizens become unwitting guinea pigs.

Collaboration and Transparency:

The medical device industry should embrace a culture of collaboration and transparency. Sharing knowledge, research, and lessons learned can help prevent the repetition of past mistakes. Open dialogue among developers, regulators, healthcare professionals, and patients ensures a holistic approach to device development, wherein diverse perspectives contribute to better, safer solutions. This collaborative mindset can serve as a safeguard against the emergence of reckless practices.

The risks associated with medical devices demand a paradigm shift within the industry. Developers must strive to distance themselves from the medtech version of Ocean Gate and instead embrace responsible innovation. Rigorous regulation, stringent quality control standards, and a relentless focus on patient safety should be the guiding principles of medical device development. By prioritising patient well-being and adopting a culture of transparency and collaboration, the industry can continue to advance while ensuring that every device that enters the market has been meticulously evaluated and designed with the utmost care.

Further reading:

Law of the Sea and the Titan incident: The legal loophole for underwater vehicles – EJIL: Talk! (ejiltalk.org)

Drugs and Devices: Comparison of European and U.S. Approval Processes – ScienceDirect

https://www.theregreview.org/2021/10/27/salazar-addressing-medical-device-safety-crisis/

https://www.medtechdive.com/news/medtech-regulation-FDA-EU-MDR-2023-Outlook/641302/
https://www.marketdataforecast.com/market-reports/Medical-Devices-Market

FDA Permits ‘Export Only’ Medical Devices | Industrial Equipment News (ien.com)

FDA issues ‘most serious’ recall over Johnson & Johnson surgical tools (msn.com)

Jury Award in Vaginal Mesh Lawsuit Could Open Flood Gates | mddionline.com

Lawsuit alleges Apple Watch’s blood oxygen sensor ‘racially biased’; accuracy problems reported industry-wide – ABC News (inferse.com)

Effective Strategies for Regulatory Compliance

1. Establish a Regulatory Compliance Plan: Develop a comprehensive plan that outlines the regulatory requirements and compliance strategies for each stage of the product development process.

2. Engage with Regulatory Authorities Early: Build relationships with regulatory authorities and engage with them early in the product development process to ensure that all requirements are met.

3. Conduct Risk Assessments: Identify potential risks and hazards associated with the product and develop risk management strategies to mitigate those risks.

4. Implement Quality Management Systems: Establish quality management systems that ensure compliance with regulatory requirements and promote continuous improvement.

5. Document Everything: Maintain detailed records of all activities related to the product development process, including design, testing, and manufacturing, to demonstrate compliance with regulatory requirements.

Stata: Statistical Software for Regulatory Compliance in Clinical Trials

Stata is widely used in various research domains such as economics, biosciences, health and social sciences, including clinical trials. It has been utilised for decades in studies published in reputable scientific journals. While SAS has a longer history of being explicitly referenced by regulatory agencies such as the FDA, Stata can still meet regulatory compliance requirements in clinical trials. StataCorp actively engages with researchers, regulatory agencies, and industry professionals to address compliance needs and provide technical support, thereby maintaining a strong commitment to producing high-quality software and staying up to date with industry standards.

Stata’s commitment to accuracy, comprehensive documentation, integrated versioning, and rigorous certification processes provides researchers with a reliable and compliant statistical software for regulatory submissions. Stata’s worldwide reputation, excellent technical support, seamless verification of data integrity, and ease of obtaining updates further contribute to its suitability for clinical trials and regulatory compliance.

To facilitate regulatory compliance in clinical trials, Stata offers features such as data documentation and audit trails, allowing researchers to document and track data manipulation steps for reproducibility and transparency. Stata’s built-in “do-files” and “log-files” can capture commands and results, aiding in the audit trail process. Stata provides the flexibility to generate analysis outputs and tables in formats commonly required for regulatory reporting (e.g., PDF, Excel, or CSV). It also enables the automation of reproducible, fully-formatted publication standard reports. Strong TLF and CRF programming used to be the domain of SAS which explains their early industry dominance. SAS was developed in 1966 using funding from the National Institute of Health. In recent years, however, Stata has arguably surpassed what is achievable in SAS with the same efficiency, particularly in the context of clinical trials.

Stata has extensive documentation of adaptive clinical trial design. Adaptive group sequential designs can be achieved using the GDS functionality. The default graphs and tables produced using GDS analysis really do leave SAS in the dust being more visually appealing and easily interpretable. They are also more highly customisable than what can be produced in SAS. Furthermore the Stata syntax used to produce them is minimal compared to corresponding SAS commands, while still retaining full reproducibility.

Stata’s comprehensive causal inference suite enables experimental-style causal effects to be derived from observational data. This can be helpful in planning clinical trials based on observed patient data that is already available, with the process being fully documentable.

Advanced data science methods are being increasingly used in clinical trial design and planning as well as for follow-up exploratory analysis of clinical trial data. Stata has both supervised and unsupervised machine learning capability in its own right for decades. Stata can also integrate with other tools and programming languages, such as Python for PyStata and PyTrials, if additional functionalities or specific formats are needed. This can be instrumental for advanced machine learning and other data science methods goes beyond native features and user-made packages in terms of customisability. Furthermore, using Python within the Stata interface allows for compliant documentation of all analyses. Python integration is also available in SAS via numerous packages and is able to eliminate some of the limitations of native SAS, particularly when it comes to graphical outputs.

Stata for FDA regulatory compliance

While the FDA does not mandate the use of any specific statistical software, they emphasise the need for reliable software with appropriate documentation of testing procedures. Stata satisfies the requirements of the FDA and is recognized as one of the most respected and validated statistical tools for analysing clinical trial data across all phases, from pre-clinical to phase IV trials. With Stata’s extensive suite of statistical methods, data management capabilities, and graphics tools, researchers can rely on accurate and reproducible results at every step of the analysis process.

When it comes to FDA guidelines on statistical software, Stata offers features that assist in compliance. Stata provides an intuitive Installation Qualification tool that generates a report suitable for submission to regulatory agencies like the FDA. This report verifies that Stata has been installed properly, ensuring that the software meets the necessary standards.

Stata offers several key advantages when it comes to FDA regulatory compliance for clinical trials. Stata takes reproducibility seriously and is the only statistical package with integrated versioning. This means that if you wrote a script to perform an analysis in 1985, that same script will still run and produce the same results today. Stata ensures the integrity and consistency of results over time, providing reassurance when submitting applications that rely on data and results from clinical trials.

Stata also offers comprehensive manuals that detail the syntax, use, formulas, references, and examples for all commands in the software. These manuals provide researchers with extensive documentation, aiding in the verification and validity of data and analyses required by the FDA and other regulatory agencies.

To further ensure computational validity, Stata undergoes extensive software certification testing. Millions of lines of certification code are run on all supported platforms (Windows, Mac, Linux) with each release and update. Any discrepancies or changes in results, output, behaviour, or performance are thoroughly reviewed by statisticians and software engineers before making the updated software available to users. Stata’s accuracy is also verified through the National Institute of Standards (NIST) StRD numerical accuracy tests and the George Marsaglia Diehard random-number generator tests.

Data management in Stata

Stata’s Datasignature Suite and other similar features offer powerful tools for data validation, quality control, and documentation. These features enable users to thoroughly examine and understand their datasets, ensuring data integrity and facilitating transparent research practices. Let’s explore some of these capabilities:

  1. Datasignature Suite:

The Datasignature Suite is a collection of commands in Stata that assists in data validation and documentation. It includes commands such as `datasignature` and `dataex`, which provide summaries and visualizations of the dataset’s structure, variable types, and missing values. These commands help identify inconsistencies, outliers, and potential errors in the data, allowing users to take appropriate corrective measures.

2. Variable labelling:

 Stata allows users to assign meaningful labels to variables, enhancing data documentation and interpretation. With the `label variable` command, users can provide descriptive labels to variables, making it easier to understand their purpose and content. This feature improves collaboration among researchers and ensures that the dataset remains comprehensible even when shared with others.

3. Value labels:

 In addition to variable labels, Stata supports value labels. Researchers can assign descriptive labels to specific values within a variable, transforming cryptic codes into meaningful categories. Value labels enhance data interpretation and eliminate the need for constant reference to codebooks or data dictionaries.

4. Data documentation:

Stata encourages comprehensive data documentation through features like variable and dataset-level documentation. Users can attach detailed notes and explanations to variables, datasets, or even individual observations, providing context and aiding in data exploration and analysis. Proper documentation ensures transparency, reproducibility, and facilitates data sharing within research teams or with other stakeholders.

5. Data transformation:

Stata provides a wide range of data transformation capabilities, enabling users to manipulate variables, create new variables, and reshape datasets. These transformations facilitate data cleaning, preparation, and restructuring, ensuring data compatibility with statistical analyses and modelling procedures.

6. Data merging and appending:

Stata allows users to combine multiple datasets through merging and appending operations. By matching observations based on common identifiers, researchers can consolidate data from different sources or time periods, facilitating longitudinal or cross-sectional analyses. This feature is particularly useful when dealing with complex study designs or when merging administrative or survey datasets.

7. Data export and import:

Stata offers seamless integration with various file formats, allowing users to import data from external sources or export datasets for further analysis or sharing. Supported formats include Excel, CSV, SPSS, SAS, and more. This versatility enhances data interoperability and enables collaboration with researchers using different software.

These features collectively contribute to data management best practices, ensuring data quality, reproducibility, and documentation. By leveraging the Datasignature Suite and other data management capabilities in Stata, researchers can confidently analyse their data and produce reliable results while maintaining transparency and facilitating collaboration within the scientific community.

Stata and maintaining CDISC standards. How does it compare to SAS?

Stata and SAS are both statistical software packages commonly used in the fields of data analysis, including in the pharmaceutical and clinical research industries. While they share some similarities, there are notable differences between the two when it comes to working with CDISC standards:

  1. CDISC Support:

SAS has extensive built-in support for CDISC standards. SAS provides specific modules and tools, such as SAS Clinical Standards Toolkit, which offer comprehensive functionalities for CDASH, SDTM, and ADaM. These modules provide pre-defined templates, libraries, and validation rules, making it easier to implement CDISC standards directly within the SAS environment. Stata, on the other hand, does not have native, dedicated modules specifically designed for CDISC standards. However, Stata’s flexibility allows users to implement CDISC guidelines through custom programming and data manipulation.

2. Data Transformation:

SAS has robust built-in capabilities for transforming data into SDTM and ADaM formats. SAS provides specific procedures and functions tailored for SDTM and ADaM mappings, making it relatively straightforward to convert datasets into CDISC-compliant formats. Stata, while lacking specific CDISC-oriented features, offers powerful data manipulation functions that allow users to reshape, merge, and transform datasets. Stata users may need to develop custom programming code to achieve CDISC transformations.

3. Industry Adoption:

SAS has been widely adopted in the pharmaceutical industry and is often the preferred choice for CDISC-compliant data management and analysis. Many pharmaceutical companies, regulatory agencies, and clinical research organizations have established workflows and processes built around SAS for CDISC standards. Stata, although less commonly associated with CDISC implementation, is still a popular choice for statistical analysis across various fields, including healthcare and social sciences. Stata has the potential to make adherence to CDISC standards a more affordable option for small companies and therefore an increased priority.

4. Learning Curve and Community Support:

SAS has a long been the default preference in the context of CDISC compliance and is what statistical programmers are used to, thus SAS is known for its comprehensive documentation and extensive user community. Resources including training materials, user forums, and user groups, which can facilitate learning and support for CDISC-related tasks. Stata also has an active user community and provides detailed documentation, but its community may be comparatively smaller in the context of CDISC-specific workflows. Stata has the advantage of reducing the amount of programming required to achieve CDISC compliance, for example in the creation of SDTM and ADaM data sets.

While SAS offers dedicated modules and tools specifically designed for CDISC standards, Stata provides flexibility and powerful data manipulation capabilities that can be leveraged to implement CDISC guidelines. The choice between SAS and Stata for CDISC-related work may depend on factors such as industry norms, organizational preferences, existing infrastructure, and individual familiarity with the software.

While SAS has historically been more explicitly associated with regulatory compliance in the clinical trial domain, Stata is fully equipped to fulfil regulatory requirements and has been utilised effectively in clinical research since. Researchers often choose the software they are most comfortable with and consider factors such as data analysis capabilities, familiarity, and support when deciding between SAS and Stata for their regulatory compliance needs.

It is important to note that compliance requirements can vary based on specific regulations and guidelines. Researchers are responsible for ensuring their analysis and reporting processes align with the appropriate regulatory standards and should consult relevant regulatory authorities when necessary.

The Devil’s Advocate: Stata for Clinical Study Design, Data Processing, & Statistical Analysis of Clinical Trials.

Stata is a powerful statistical analysis software that offers some advantages for clinical trial and medtech use cases compared to the more widely used SAS software. Stata provides an intuitive and user-friendly interface that facilitates efficient data management, data processing and statistical analysis. Its agile and concise syntax allows for reproducible and transparent analyses, enhancing the overall research process with more readily accessible insights.

Distinct from R, which incorporates S based coding, both Stata and SAS have used C based programming languages since 1985.  All three packages can parse full Python within their environment for advanced machine learning capabilities, in addition to those available natively. In Stata’s case this is achieved through the pystata python package. Despite a common C based language, there are tangible differences between Stata and SAS syntax. Stata generally needs less lines of code on average compared to SAS to perform the same function and thus tends to be more concise. Stata also offers more flexibility to how you code as well as more informative error statements which makes debugging a quick and easy process, even for beginners.

When it comes to simulations and more advanced modelling our experience had been that the Basic Edition of Stata (BE) is faster and uses less memory to perform the same task compared to Base SAS. Stata BE certainly has more inbuilt capabilities than you would ever need for the design and analysis of advanced clinical trials and sophisticated statistical modelling of all types. There is also the additional benefit of thousands of user-built packages, such as the popular WinBugs, that can be instantly installed as add-ons at no extra cost. Often these packages are designed to make existing Stata functions even more customisable for immense flexibility and programming efficiency.  Both Stata and SAS represent stability and reliability and have enjoyed widespread industry adoption. SAS has been more widely adopted by big pharma and Stata more-so with public health and economic modelling. 

It has been nearly a decade since the Biostatistics Collaboration of Australia (BCA) which determines Biostatistics education nationwide has transitioned from teaching SAS and R as part of their Masters of Biostatistics programs to teaching Stata and R. This transition initially was made in anticipation of an industry-wide shift from SAS to Stata. Whether their predictions were accurate or not, the case for Stata use in clinical trials remains strong.

Stata is almost certainly a superior option for bootstrapped life science start-ups and SMEs. Stata licencing fees are in the low hundreds of pounds with the ability to quickly purchase over the Stata website, while SAS licencing fees span the tens to hundreds of thousands and often involve a drawn-out process just to obtain a precise quote.

Working with a CRO that is willing to use Stata means that you can easily re-run any syntax provided from the study analysis to verify or adapt it later. Of course, open-source software such as R is also available, however Stata has the advantage of a reduced learning curve being both user-friendly and sufficiently sophisticated.

Stata for clinical trials

  1. Industry Adoption:

Stata has gained significant popularity and widespread adoption in the field of clinical research. It is commonly used by researchers, statisticians, and healthcare professionals for the statistical analysis of clinical data.

2. Regulatory Compliance and CDISC standardisation:

Stata provides features and capabilities that support regulatory compliance requirements in clinical trials. While it may not have the same explicit recognition from CDISC as SAS, Stata does lend itself well to CDISC compliance and offers tools for documentation, data tracking, and audit trails to ensure transparency and reproducibility in analyses.

3. Comprehensive Statistical Procedures:

A key advantage of Stata is its extensive suite of built-in statistical functions and commands specifically designed for clinical trial data analysis. Stata offers a wide range of methods for handling missing data, performing power calculations, and of course a wide range of methods for analysing clinical trial data; from survival analysis methods, generalized linear models, mixed-effects models, causal inference, and Bayesian simulation for adaptive designs. Preparatory tasks for clinical trials such as meta-analysis, sample size calculation and randomisation schedules are arguably easier to achieve in Stata than SAS. These built-in functionalities empower researchers to conduct various analyses within a single software environment.

4. Efficient Data Management:

Stata excels in delivering agile data management capabilities, enabling efficient data handling, cleaning, and manipulation. Its intuitive data manipulation commands allow researchers to perform complex transformations, merge datasets, handle missing data, and generate derived variables seamlessly.

Perhaps the greatest technical advantage of Stata over SAS in the context of clinical research is usability and greater freedom to keep open and refer to multiple data sets with multiple separate analyses at the same time. While SAS can keep many data sets in memory for a single project, Stata can keep many data sets in siloed memory for simultaneous use in different windows to enable viewing or working on many different projects at the same time. This approach can make workflow easier because no data step is required to identify which data set you are referring to, instead the appropriate sections of any data sets can be merged with the active project as needed and due to siloing, which works similarly to tabs in a browser, you do not get the log, data or output of one project mixed up with another. This is arguably an advantage for biostatisticians and researchers alike who typically do need to compare unrelated data sets or the statistical results from separate studies side-by-side.

5. Interactive and Reproducible Analysis:

Stata provides an interactive programming environment that allows users to perform data analysis in a step-by-step manner. The built-in “do-file” functionality facilitates reproducibility by capturing all commands and results, ensuring transparency and auditability of the analysis process. The results and log window for each data set prints out the respective syntax required item by item. This syntax can easily be pasted into the do-file or the command line to edit or repeat the command with ease. SAS on the other hand tends to separate the results from the syntax used to derive it.

6. Graphics and Visualization:

While not traditionally known for this, Stata actually offers a wide range of powerful and customizable graphical capabilities. Researchers can generate high-quality publication standard  plots and charts of any description needed to visualise clinical trial results Common examples include survival curves, forest plots, spaghetti and diagnostic plots. Stata also has built-in options to perform all necessary assumption and model checking for statical model development.

These visualisations facilitate the exploration and presentation of complex data patterns, as well as the presentation, and communication of findings. There are many user-created customisation add-ons for data visualisation that rival what is possible in R customisation.

The one area of Stata that users may find limiting is that it is only possible to display one graph at a time per active data set. This means that you do need to copy graphs as they are produced and save them into a document to compare multiple graphs side by side.

7. Active User Community and Support:

Like SAS, Stata has a vibrant user community comprising researchers, statisticians, and experts who actively contribute to discussions, share knowledge, and provide support. StataCorp, the company behind Stata, offers comprehensive documentation, online resources, and user forums, ensuring users have access to valuable support and assistance when needed. Often the resources available for Stata are more direct and more easily searchable than what is available for SAS when it comes to solving customisation quandaries. This is of course bolstered by the availability of myriad instant package add-ons.

Stata’s active and supportive user community is a notable advantage. Researchers can access extensive documentation, online forums, and user-contributed packages, which promote knowledge sharing and facilitate problem-solving. Additionally, Stata’s reputable technical support ensures prompt assistance for any software-related queries or challenges.

While SAS and Stata have their respective strengths, Stata’s increasing industry adoption, statistical capabilities, data management features, reproducibility, visualisation add-ons, and support community make it a compelling choice for clinical trial data analysis.

As it stands, SAS remains the most widely used software in big-pharma for clinical trial data analysis. Stata however offers distinct advantages in terms of user-friendliness, tailored statistical functionalities, advanced graphics, and a supportive user community. Consider adopting Stata to streamline your clinical trial analyses and unlock its vast potential for gaining insights from research outcomes. An in-depth overview of Stata 18 can be found here. A summary of it’s features for biostatisticians can be found here.

Further reading:

Using Stata for Handling CDISC Complient Data Sets and Outputs (lexjansen.com)

P Values, Confidence Intervals and Clinical Trials

P values are so ubiquitous in clinical research that it’s easy to take for granted that they are being understood and interpreted correctly. After-all, one might say, they are just simple proportions and it’s not brain surgery. At times, however, its’ the simplest of things that are easiest to overlook. In fact, the definitions and interpretations of p values are sufficiently subtle that even a minute pivot from an exact definition can lead to interpretations that are wildly misleading.

In the case of clinical trials, p values have a momentous impact on decision making in terms of whether or not to pursue and invest further into the development and marketing of a given therapeutic. In the context of clinical practice p values drive treatment decisions for patients as they essentially comprise the foundational evidence upon which these treatment decisions are made. This is perhaps as it should be, as long as the definition of p values and their interpretations are sound.

A counter-point to this is the bias towards publishing only studies with a statistically significant p value, as well as the fact that many studies are not sufficiently reproducible or reproduced. This leaves clinicians with an impression that evidence for a given treatment is stronger than the full picture would suggest. This however is a publishing issue rather than an issue of significance tests themselves. This article focusses on interpretation issues only.

As p values apply to the interpretation of both parametric and non-parametric tests in much the same way, this article will focus on parametric examples.

Interpreting p values in superiority/difference study designs

This refers to studies where we are seeking to find a difference between two treatment groups or between a single group measured at two time points. In this case the null hypothesis is that there is no difference between the two treatment groups or no effect of the treatment, as the case may be.

According to the significance testing framework all p values are calculated based upon an assumption that the null hypothesis is true. If a study yields a p value of 0.05, this means that we would expect to see a difference between the two groups at least as extreme as the observed effect 5% of the time; if the study were to be repeated. In other words, if there is no true difference between the two treatment groups and we ran the experiment 20 times on 20 independent samples from the same population, we would expect to see a result this extreme once out of the 20 times.

This of course is not a very helpful way of looking at things if our goal is to make a statement about treatment effectiveness. The inverse likely makes more intuitive sense: if were were to run this study 20 times on distinct patient samples from the same population, 19 out of 20 times we would not expect a result this extreme if there was no true effect. Based on the rarity of the observed effect, we conclude that likelihood of the null hypothesis being the optimal explanation of the data is sufficiently low that we can reject it. Thus our alternative research hypothesis, that there is a difference between the two treatments, is likely to be true. As the p value does not tell us whether the difference is a positive or negative direction, care should of course be taken to confirm which of the treatments holds the advantage.

P values in non-inferiority or equivalence studies.

In non-inferiority and equivalence studies a non-statistically significant p value can be a welcome result, as can a very low p value where the differences were not clinically significant, or where the new treatment is shown to be superior to the standard treatment. By only requiring the treatment not to be inferior, more power is retained and a smaller sample size can be used.

The interpretation of the p value is much the same as for superiority studies, however the implications are different. In these types of studies it is ideal for the confidence intervals for the individual treatment effects to be narrow as this provides certainty that the estimates obtained are accurate in the absence of a statistically significant difference between the two estimates.

While alternatives to p values exist, such as Bayesian statistics, these statistics have limitations of their own and are subject to the same propensity for misuse and misinterpretation as frequentist statistics are. Thus it remains important to take caution in interpreting all statistical results.

What p values do not tell you

A p value of 0.05 is not the same as saying that there is only a 5% chance that the treatment wont work. Whether or not the treatment works in the individual is another probability entirely. It is also not the same as saying there is a 5% chance of the null hypothesis being true. The p value is a statistic that is based on the assumption that the null hypothesis is true and on that basis gives the likelihood of the observed result.

Nor does the p value represent the chance of making a type 1 error. As each repetition of the same experiment produces a different p value, it does not make sense to characterise the p value as the chance of incorrectly rejecting the null hypothesis ie making a type one error. Instead, an alpha cut-off point of 0.05 should be seen as indicating a result rare enough under the null hypothesis that we are now willing to reject the null as the most likely explanation given the data. Under a type-one error alpha of 0.05 this decision is expected to be wrong 5% of the time, regardless of the p value achieved in the statistical test. The relationship between the critical alpha and statistical power is illustrated below.

Another misconception is that a small p value provides strong support for a given research hypothesis. In reality a small p value does not necessarily translate to a big effect, nor a clinically meaningful one. The p value indicates a statistically significant result, however it says nothing about the magnitude of the effect or whether this result is clinically meaningful in the context of the study. A p value of 0.00001 may appear to be a very satisfactory result, however if the difference observed between the two groups is very small then this is not always the case. All it would be saying is that “we are really really sure that there is only minimal difference between the two treatments”, which in a superiority design may not be as desired.

Minimally important difference (MID)

This is where the importance of pre-defining a minimally important difference (MID) becomes evident. The MID, or clinically meaningful difference. should be defined and quantified in the design stage before the study is to be undertaken. In the case of clinical studies this should generally be done in consultation with the clinician or disease expert concerned.

The MID may take different forms depending on whether a study is a superiority design, versus an equivalence or non-inferiority design. In the case of a superiority design or where the goal of the study is to detect a difference, the MID is the threshold of minimum difference at which we would be willing to consider the new treatment worth pursuing over the standard treatment or control being used as the comparator. In the case of a non-inferiority design the MID would be the minimum lower threshold at which we would still consider the new treatment as equally effective or useful as the standard treatment. Equivalence design on the other hand may sometimes rely on an interval around the standard treatment effect.

When interpreting results of clinical studies it is of primary importance to keep a clinically meaningful difference in mind, rather than defaulting to the p value in isolation. In cases where the p value is statistically significant, it is important to ask whether the difference between comparison groups is also as large as the MID or larger.

Confidence Intervals

All statistical tests that involve p values can produce a corresponding confidence interval for the estimates. Unlike p values, confidence intervals do not rely on an assumption of the null hypothesis but rather on the assumption that the sample approximates the population of interest. A common estimate in clinical trials where confidence intervals become important is the treatment effect. Very often this translates to the difference in means of a surrogate endpoint between two groups, however confidence intervals are also important to consider for individual group means/ treatment effects, which are an estimate of the population means of the endpoint in these distinct groups/treatment categories.

Confidence interval for the mean

A 95% confidence interval of the estimate of the mean indicates that, if this study were to be repeated, the mean value is expected to fall within this interval 95% of the time. While this estimate is based on the real mean of the study sample our interest remains in making inferences about the wider population who might later be subject to this treatment. Thus inferentially the observed mean and it’s confidence interval are both considered an estimate of the population values.

In a nutshell the confidence interval indicates how sure we can be of the accuracy of the estimate. A narrower interval indicates greater confidence and a wider interval less. The p value of the estimate indicates how certain we can be of this result, ie the interval itself.

Confidence interval for the mean difference, treatment effects or difference in treatment effects

The mean difference in treatment effect between two groups is an important estimate in any comparison study, from superiority to non-inferiority clinical trial designs. Treatment response is mainly ascertained from repeated measures of surrogate endpoint data on the individual level. One form of mean difference is repeated measures data from the same individuals at different time points, these individuals’ differences could then be compared between two independent treatment groups. In the context of clinical trials, confidence intervals of the mean difference can relate to an individual’s treatment effect or to group differences in treatment effects.

A 95% Confidence interval of the mean difference in treatment effect indicates that 95 per cent of the time, if this study were to be repeated, the true difference in treatment effect between the groups is expected to fall within this interval. A confidence interval containing zero indicates that a statistically significant difference between the two groups has not been found. Namely, if part of the time the true population value representing the difference is expected to fall above zero on the number line and part of the time to fall below zero, indicating a difference in the opposite direction, we cannot be sure whether one group is higher or lower than the other.

Much ho-hum has been made of p values in recent years but they are here to stay. While alternatives to p values exist, such as Bayesian methods, these statistics have limitations of their own and are subject to the same propensity for misuse and misinterpretation as frequentist statistics are. Thus it remains important to take caution in interpreting all statistical results.

Sources and further reading:

Gao, P-Values – A chronic conundrum, BMC Medical Research Methodology (2020), 20:167
https://doi.org/10.1186/s12874-020-01051-6

The Royal College of Ophthalmologists, The clinician’s guide to p values, confidence intervals, and magnitude of effects, Eye (2022) 36:341–342; https://doi.org/10.1038/s41433-021-01863-w